PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_450_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family M-type_MADS
Protein Properties Length: 384aa    MW: 43251.6 Da    PI: 6.5991
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_450_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.4e-243175145
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  kr e+++nrqvt+skRrngilKKA ELS+LCd+++ +++fs++g+
  Neem_450_f_2 31 KRLESTTNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPNGR 75
                  689****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.9322383IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-322382IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2624110IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-202545IPR002100Transcription factor, MADS-box
PfamPF003195.4E-213378IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-204560IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-206081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MENSRHLLGY RSTKDCANLI CRMGRVKLKI KRLESTTNRQ VTYSKRRNGI LKKARELSIL  60
CDIDIVLLMF SPNGRPTLFH GSRSNIEEVI ARFAQLTPQE RAKSTQTVEE LTNHVRILQA  120
QLTEAHQRLR YWNNPDNIDS VEHLRQMENS LRESISRISL HKENFGKQQF MSLEFTSQGG  180
MQLPLMMSGV QENQPLSWLP NNDGQNMLVP NEPNFLSQSQ RDMGCSEDTP IPGYSGLLAA  240
GKEIEVANSG QADNIRNGGS NLNELGTSAC LSLQLGEQYS YSPYSSLNLS DDKKLKPDVE  300
MNLQGNPAVY QVNGNFELPR PVYGNGHHDW ISASGPCGTT IFDENSYLQV RILSNCIYYT  360
LSNFSLFIIA TEHSSFDSLS SSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-1423111188Myocyte-specific enhancer factor 2B
1tqe_Q3e-1423111188Myocyte-specific enhancer factor 2B
1tqe_R3e-1423111188Myocyte-specific enhancer factor 2B
1tqe_S3e-1423111188Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440615.10.0hypothetical protein CICLE_v10020575mg
SwissprotQ7X9I02e-80AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLV4TQ760.0V4TQ76_9R
STRINGVIT_17s0000g06340.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.19e-77AGAMOUS-like 65